NQSII

The nqsii executor runs pipeline tasks using the NQSII resource manager. It submits each task as an NQSII job using the qsub command.

To enable the NQSII executor, set process.executor = 'nqsii' in the nextflow.config file. Launch the pipeline from a node where qsub is available, typically the cluster login node.

Use the following process directives to control resource requests and other job characteristics:

• clusterOptions
• cpus
• memory
• queue
• time