PBS Pro

The pbspro executor runs pipeline tasks using the PBS Pro resource manager. It submits each task as a PBS Pro job using the qsub command.

To enable the PBS Pro executor, set process.executor = 'pbspro' in the nextflow.config file. Launch the pipeline from a node where qsub is available, typically the cluster login node.

Use the following process directives to control resource requests and other job characteristics:

• clusterOptions
• cpus
• memory
• queue
• time