SGE

The sge executor runs pipeline tasks using a Sun Grid Engine cluster or a compatible platform, such as Open Grid Engine or Univa Grid Engine. It submits each task as an SGE job using the qsub command.

To enable the SGE executor, set process.executor = 'sge' in the nextflow.config file. Launch the pipeline from a node where qsub is available, typically the cluster login node.

Use the following process directives to control resource requests and other job characteristics:

• clusterOptions
• cpus
• memory
• penv
• queue
• time