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Version: 23.1

Tower Enterprise changelog

2023

23.1.0 - 28 Apr 2023

  • Add Fusion logs download (#4385) [49eb6dbe]
  • Add Fusion support for Google Batch (#4654) [968d9fb1]
  • Add missing launch option in pipeline action menu (#4441) [56313780]
  • Add source reference to launch entity (#4527) [bd073128]
  • Add support for AWS Parameters Store (#4563) [0f9f5400]
  • Add teams management to admin panel (#4553) [8e019921]
  • Add Save run as pipeline (#4610) [a14e1280]
  • Add workspace selection in All runs page [b574db06]
  • Add Launchpad redesign with list and cards views (#4110) [92345120]
  • Add ability to export dashboard data as CSV (#4463) [765931ad]
  • Add azure repos credentials (#4012) [f03f8a55]
  • Add the possibility to customize the log format (#4558) [3891345c]
  • Add Wave pairing via websockets (#4624) [cf16292e]
  • Add dashboard stats date filter (#4575) [86e95d3e]
  • Add AWS_MAX_ATTEMPTS and AWS_RETRY_MODE to Batch launch environment (#4738) [e7ec2c96]
  • Allow S3 PutObjectTagging to instance role created by Batch Forge (#4511) [c8c8e76a]
  • Allow exact match search filters (#4396) [d90acc18]
  • Allow to share a Tower Agent connection (#4395) [1cfaee91]
  • Allow the customization prefix of Batch Forge resources (#4693) [67072462]
  • Move workflow deletion audit event to service method (#4531) [9b56ad79]
  • Remove required check from "headQueue" field in grid platform providers (#4655) [782ab02d]
  • Improve Fusion v2 support for EBS disk (#4740) [e1d280d1]
  • Improve config properties documentation reference (#4757) [01d08d9d]
  • Improve support for AWS SSM as Params store (#4824) [3e2c568d]
  • Improve trace service removing blocking queue (#4427) [1c788612]
  • Increase 10 min length for pwd hint (#4606) [6adaba95]
  • Deprecate Fusion v1 (#4694) [74fb5bd6]
  • Fix: partial failure workflow status icon shows green check (#4371) [981aeb26]
  • Fix: Missing AWS Cloudstream logs (#4476) [3d88a618]
  • Fix: NPE when retrieving progress usage data (#4621) [85c4836c]
  • Fix: bug that throws ConcurrentModifactionException while cancelling tasks (#4656) [9d0eda97]
  • Fix: cancellation of a workflow already terminated (#4622) [d665beeb]
  • Fix: "Row size too large" MySQL problem (#4688) [793471da]
  • Fix: Incorrect loading of Runs page after launching a pipeline (#4530) [b297bf42]
  • Fix: make OAuth 2 cookies secured (#4478) [904e1e2d]
  • Fix: Return HTTP 503 error when Redis is not available (#4605) [fa88e17d]
  • Fix: Set name on FSx file system create by Tower (#4393) [cb631a72]
  • Fix: Dataset's page CSV viewer crashes if there is an empty column and first row as header is checked (#4489) [21275c9a]
  • Fix: Handle unexpected error when accessing Azure repos with node creds (#4707) [6df882f0]
  • Fix: Relaunch workflow form does not populate the CE field if initial CE was deleted (#4538) [1fc7494f]
  • Fix: do not show incomplete text on Launchpad for Launcher users (#4495) [1ed88626]
  • Fix: navigate to Pipeline detail from "Pipeline successfully saved" notification (#4774) [0420c0d8]
  • Fix: prevent changing launch work dir inside pipeline input form (#4408) [496827ea]
  • Fix: properly display default Launchpad sort option (#4492) [1e712aa3]
  • Fix: remove duplicate ECS config input in AWS CE form (#4423) [52d057ab]
  • Fix: remove secrets controls if CE does not support them (#4714) [f3137ca7]
  • Fix: restore Launchpad loading indicator (#4509) [9b3fbc26]
  • Fix: sanitize characters in job and workflow error text messages (#4712) [0e6b2b7d]
  • Fix: tag correctly compute environment and service role when resource (#4379) [ed96b5a6]
  • Fix: workflow deletion failure when has a launch record associated (#4786) [9778e579]
  • Fix: workflow launch form autoselects CE when workspace is shared (#4744) [9b6c5df8]
  • Bump version nf-launcher:j17-23.04.1 [72eaa795]
  • Bump Micronaut to version 3.8.5 (#4324) [79c1e50c]

22.4.2 - 21 Feb 2023

  • Fix: issue retrieving execution logs from CloudWatch (#4476) [638513b7]
  • Fix: issue setting AWS CloudWatch custom log group name (#4475) [f020719c]
  • Chore: Improve cloudwatch labels (#4498) [69b790fa]
  • Bump: nf-launcher:j17-22.10.7 [a7b6fd26]

22.4.1 - 10 Feb 2023

  • fix: add auto height to selectable columns (#4409) [e4f62488]
  • fix: remove duplicate ECS config input in AWS CE form (#4423) [3dbb0dad]

22.4.0 - 6 Feb 2023

  • Feat: All workflow runs page (#3777) [b89ba895]
  • Feat: Refresh the dashboard data every 5 seconds (#3935) [dd65935d]
  • Feat: Support for Gitea provider (#3995) [c1640d7b]
  • Feat: Allow resume workflow in different CEs having compatible work directory (#4169) [ae782606]
  • Feat: AWS Batch ECS custom configuration [1a5faf12]
  • Feat: Wave pairing naming refactor (#4300) [c9c9dc8f]
  • Feat: Pipeline and workflow resource labels customization (#3955) [b1fa9756]
  • Add europe-west2 location for Google Batch (#4203) [8bfda45c]
  • Add missing lvm2 package to be able to mount multiple NVMe disks as a single volume (#4091) [4ffba872] [80c72e1c]
  • Add support for custom CloudWatch logs group name (#3866) [97156c57]
  • Add missing sourceWorkspaceId OpenAPI parameters (#4050) [72fa1822]
  • Add Fusion NVMe support (#3942) [9ea72cc9]
  • Add credentials/keys endpoint [25906e00]
  • chore: gh actions workflows updates to suppress deprecation warnings (#4342) [b9bce117]
  • chore: implements patch gcp registry credentials to remove newlines (#4307) [aed573ff]
  • chore: Increase pipeline/projectName limit to 200 chars (#4317) [beb79d8d]
  • chore: Run status time enhancements (#4289) [69848871]
  • chore: Task 2882/add validation for custom role (#4068) [86967166]
  • chore: Increase prod labels limit to 1k [9e5cccd9]
  • chore: Update AWS regions (#4118) [99d7f6bb]
  • chore: Revert FSx unmount (#4177) [199eb24b]
  • chore: When running with Gitpod, create valid AWS credentials with assume role (#4114) [7ed1491f]
  • chore: Improve task duration stats (#4106) [4a51d956]
  • chore: update workflow status timing messages (#4075) [9939145b]
  • chore: [BREAKING] remove autoinjection of roles when allowInstanceCredentials property is true (#4093) [5de61137]
  • chore: Limit the time range selection when querying stats (#3993) [e273130d]
  • chore: Cache restore and backup via Tower plugin (#3599) [719442fb]
  • chore: Set BEST_FIT_PROGRESSIVE as default AWS Batch allocation strategy (#3956) [6442dcd8]
  • test: Create Playwright e2e tests for Google Life Sciences CEs (#3899) [ba1c1254]
  • Fix: prevent calling BE with undefined workspaceId (#4349) [25943dd3]
  • Fix: Re-launch of Tower actions should preserve parameters (#4270) [2a232104]
  • Fix iframe for HTML reports (#4135) [bb878118]
  • Fix: Azure CE creation fails in CI because of auto-scaling formula (#4180) [35543dd4]
  • Fix: replace clr running color with the proper primary one (#4222) [8e424cf5]
  • Fix: add explicit 'Authorization' header as param name to security scheme in order to fix issue with wrong header in OpenAPI GUI requests (#4218) [48fdb2fa]
  • Fix: improve search syntax error handling (#4020) [a19ffbd5]
  • Fix AWS Batch kernel issue causing OOM error (#4015) [7a8c5488]
  • Fix: move authentication method to private app for hubspot (#3960) [a8aa6e79]
  • Fix: additional joins for audit publisher entity (#3934) [23deb598]
  • bump Upgrade to Java 17 (#3973) [2e915336]
  • Bump nextflow 22.10.6 in get started page [28f44796]
  • Bump nf-launcher:j17-22.10.6 [570658c5]
  • Bump Upgrade backend to Micronaut 3.7 (#3876) [11203a05]

22.3.2 - 9 Feb 2022

  • nf-launcher:j17-tw-22.3-nf-22.10.6

2022

22.3.1 - 12 Dec 2022

  • Bump nf-launcher:j17-22.10.4 [26da757f]
  • Fix: Remove autoinjection of roles when allowInstanceCredentials property is true [BREAKING] (#4093) [1d6adc9f]
  • Fix AWS Batch kernel issue causing OOM error (#4015) [f59b9edd]

22.3.0 - 4 Nov 2022

  • Add support for Google Batch (#3532) [ba641280]
  • Add support for Resource Labels (#3511) [1fa2dc7e]
  • Add support for Resource Labels for Google Batch (#3836) [157f3cd8]
  • Add support for Wave + Fusion (#3713) [0f49a7cb]
  • Add users and orgs management to admin panel (#3659) [9fda24b6]
  • Add ability to expand boot EBS volume size (#3299) (#3425) [b523c5dc]
  • Add Runs dashboard page (#3734) [35073fdb]
  • Add support for txt reports preview (#3862) [bba73371]
  • Add confirmation dialog enhancements (#3470) [bd19b70d]
  • Add unmount FSx lustre filesystem on SPOT instance termination (#3430) [155c8a7b]
  • Add run detail page link to both html and txt email templates (#3907) [58f5ef4e]
  • Add Allow organization owners to access all workspaces in the organization (#3703) [a0fad25f]
  • Fix: 3423 optimization configuration not retained on re launch (#3841) [19b4bbe4]
  • Fix: 3654 regression optimization column in workflow list lost (#3655) [10471ade]
  • Fix: 3769 delete confirmation message allows prompts to be bypassed without entering delete in the text box (#3770) [ba442e24]
  • Fix: 3773 invalid unit for vol ctxt and inv ctxt at tasks table (#3774) [0e34ae0e]
  • Fix: BitBuckerServer Git provider #3670 [c91635b0]
  • Fix: container registry name (#3708) [1f42959e] [9dd37809]
  • Fix: missing file existance check for GLS in nf-launcher [7ca43e51]
  • Fix: resume functionality on Google Life Sciences (#3539) [10419c93]
  • Fix: stalling on failing local submit (#3492) [ea82e5f4]
  • Fix: "Pre-run script" errors are not displayed in the logs (#3484) [65134954]
  • Fix: Cannot add optimization status to unknown response object (#3450) [ac1fd478]
  • Fix: Invalid unit in the tasks table (#3714) [53399902]
  • Fix: Resume does not work when user has "launch" permission (#3072) [15433b31]
  • Fix: Unable to save status for job when a DB exception occurs (#3490) [9788ace0]
  • Fix: escape qstat command for Altair PBS batch scheduler (#3489) [adb2b773]
  • Fix: failing test due to phantom job interval on Mysql (#3537) [b4249066]
  • Fix: trim sub-second precision from dates (mysql compat) (#3788) [2ade7174]
  • Fix: disallow dashes in secret names (#3643) (#3644) [81d09056]
  • Fix: invalid job transition to unknown status [ci fast] [65f44fc2]
  • Fix: Resource label input parses whole word before '=' (#3847) [12d6b09d]
  • Make stage url config (#3700) [b7219259]
  • Open up all endpoints and parameters related to labels and resource labels (#3814) [bf9a30e8]
  • Restyling of workflow detail header (#3547) [d2024f66]
  • Update xpack urls [BREAKING] [700436e5]
  • [BREAKING] Add batch:TagResource to Batch instance role [dba6cb34]
  • chore: restore workflow reports messaging (#3802) [9640254a]
  • chore: Bad request response when query parameters are malformed (#3649) [376def9c]
  • fix: admin tests race condition (#3868) [977fbff1]
  • fix: Gray screen when navigating back after opening a task detail (#3873) [3a04872a]
  • fix: add ListWorkspaceSettings permission to admin and maintainer (#3453) [d9bae03a]
  • fix: added new query for star row deletion and modified test (#3514) [459bc3e4]
  • fix: broken labels input formcontrol binding (#3656) [139e633a]
  • fix: broken quick-launch page layout on personal workspace (#3495) [ebd0cf11]
  • fix: Increase the quota limit for datasets (and dataset versions) per workspace to 100 (#3673) [818c4bf5]
  • fix: bypass name checks if the label name has not changed (case-insensitive) (#3578) [293e5478]
  • fix: case-insensitive search for orgs and users (#3739) [766d8056]
  • fix: datasets suggestions for pipelines with schemas that expect tsv type (#3582) [1f48e0de]
  • fix: disable ngx-bootstrap collapsible component animation (#3727) [a13dcecc]
  • fix: highlight support nav button when in welcome page (#3798) [312f1c91]
  • fix: humanize values for duration and realtime in tasks table (#3707) [30819908]
  • fix: include personal workspace as possible value for last accessed workspace item in local storage (#3885) [151b708a]
  • fix: inconsistent navigation to an organization when the organization name matches a resource label name [e2e] (#3685) [d045ac0c]
  • fix: inherit from DataSpecification (#3745) [be04f004]
  • fix: lazy load workflow details page main tabs (#3857) [8e504625]
  • fix: make routing service always get routeContext from params when requested [e2e] [ci fast] [a6baca64]
  • fix: Check for workspace id in the endpoint URL of an action in the workspace context (#3464) [db80231f]
  • fix: move credentials keys patching/removal logic into credentials component base (#3765) [4537df99]
  • fix: prevent double task endpoint invocation (#3830) [49a14f6e]
  • fix: prevent null reference exception on humanizeCounter formatter util (#3785) [e5810dec]
  • fix: redirect to personal workspace if user is not a participant in any workspace (#3683) [21e98d3c]
  • fix: redirect to the last route on login after jwt token failed to refresh (#3619) [7ec1cfe3]
  • fix: remove deprecated share button (#3496) [55b47cd3]
  • fix: restore inline credentials creation functionality for grid platforms (#3542) [8707a05e]
  • fix: restore moab platform icon (#3821) [e6688528]
  • fix: restore tasks table column formatters after migration to mat table [e2e] (#3787) [009f5e76]
  • fix: restore vertical scroll inside inputs (#3853) [df65253c]
  • fix: set resume param depending on workflow completion status [e2e] (#3572) [177a7805]
  • fix: show actionable error message on unparsable config file (#3451) [3cfd96d6]
  • fix: small visual bugs fixes (#3837) [ci fast] [1b0a685b]
  • fix: wrong launchpad layout when pipeline names are long (#3527) [318b02b3]
  • tweak: switch typing method to help prompt display (#3698) [c31b02f3]
  • tweak: Required/optional field labels enhancement (#3544) [e7f08557]
  • tweak: allow path variables for grid platform launch directory field (#3883) [6ed1eba6]
  • tweak: apply standard glob sorrounding to task list search (#3672) [d66c8740]
  • tweak: Check that users with invalid names are not rejected when registering (#3816) [02e89664]
  • tweak: move repo link to repo name in workflow detail header (#3564) [44fdd0ba]
  • tweak: pass date filters when clicking on the run stat inside the dashboard page (#3901) [5cfda8b6]
  • tweak: remove confirmation input from cancel workflow prompt [5d3aca10]
  • tweak: remove redundant logs.length from log view (#3446) [794cbe3b]
  • tweak: set max length of revision field to 100 characters (#3882) [4040166c]
  • tweak: Enable angular strict template checking (#3596) [a569e5fe]
  • tweak: Display provider icon in credentials/CE selection dropdowns, encapsulate in icon component (#3690) [8a4c7ffd]
  • tweak: Do not allow email using a top-level domain hostname (#3526) [0bae08ca]
  • tweak: Email validators are out of sync (FE side) (#3778) [0d564656]
  • tweak: Establish use of english locale globally in tower-web (#3679) [a40d0483]
  • tweak: customize the head node resources in the launch/relaunch form (#3448) (#3449) [42caa475]
  • tweak: update pages layout (#3481) [24fc32cf]
  • tweak: Improve SSH connector resilience + UGE qstat [cbdab74d]
  • Bump nf-launcher:j17-22.10.1 [ci fast] [bfc1ea0d]
  • Bump angular 14 (#3660) [130f0ffc]

22.2.4 - 2 Sept 2022

  • Bump the quota limit for dataset per workspace to 100 (#3673) [c8df0e6]
  • Fix BitBuckerServer Git provider #3670 [3b4172b]

22.2.3 - 11 Aug 202

  • Rollback to nf-launcher:j17-22.06.1-edge [135f5d59]

22.2.2 - 8 Aug 202

  • Bump nf-launcher@22.08.0-edge [786d43be]
  • Fix resume functionality on Google Life Sciences (#3539) [5b2a50b7]
  • fix: remove deprecated share button (#3496) [5af149f8]

22.1.8 - 8 Aug 2022

  • Fix resume functionality on Google Life Sciences (#3539) [5b389773]

22.2.1 - 5 Aug 2022

  • feat: unmount FSx lustre filesystem on SPOT instance termination
  • fix: escape qstat command for Altair PBS batch scheduler
  • fix: improve SSH connector resilience + UGE qstat
  • fix: Patch invalid job transition to unknown status

22.1.7 - 25 Jul 2022

  • Improve SSH connector resilience + UGE qstat [755b6ce4][8e876d22]

22.2.0 - 15 Jul 2022

Breaking Changes
  • The MySql DB driver com.mysql.cj.jdbc.Driver has been replaced by org.mariadb.jdbc.Driver. Env variable TOWER_DB_DRIVER referencing the first should be changed with the latter.
Other Changes
  • feat: Added support for Illumina DRAGEN
  • feat: Added support to mysql8
  • feat: Allow access remote pipelines via Tower Agent
  • feat: Feature 3025 reports download limit
  • feat: Adds used datasets tab to run details page
  • feat: Add support for redis password
  • feat: pipeline reports index page
  • feat: Feature 2663 / Labels
  • feat: Add support for AWS CodeCode repositories
  • feat: runName filled with random run name by default if not in relaunch mode
  • feat: Allow the ability to send cluster options from head queue to child nodes
  • feat: Add advanced search capabilities to runs page
  • fix: error when trying to remove unexistent csv renderer options component
  • fix: invalid escape of blank chars in URL [ci fast]
  • fix: issue download report with blanks
  • fix: Nginx proxy pass decoding
  • fix: Solves #3077 by modifying the validation logic
  • fix: set dataset file mime type depending on file extension
  • fix: Use mdiag command to check MOAB platform
  • fix: Do not force a main.nf file at default branch when creating a pipeline
  • fix: suggest valid runName when launcher resumes
  • fix: Populate timestamps for partial workflow progress updates
  • fix: Enable maintainers to create workspace secrets
  • fix: prevent infinite redirection when landingUrl = applicationUrl
  • fix: Change MOAB queue status command
  • fix: hide workflow run datasets tab in the personal workspace context
  • fix: Add the support for USR2 signal for grid providers launcher script
  • fix: Fix perms for encrypted bucket
  • fix: missing dataset in workflow run page
  • fix 3309 compute environment not visible when viewing actions
  • fix: multiple dropdown menus remain when selecting
  • fix: IllegalArgumentException on empty config file
  • fix: Can't re-launch failed workflow without commit
  • fix: cancel button malfunctions in most menus where elements get added
  • fix: prevent the deletion of a CE when the status is CREATING.
  • fix: produce two different entries for custom user config and optimized config.
  • fix: tweak: remove "None" item from select inputs when the field is required
  • fix: fixed the case when optimization config was not shown for workflow details page
  • fix: Disallow relative path workdir
  • fix: Use NotFound exception at Google LS provider
  • chore: update ENVIRONMENTVARIABLE_NAME regex to allow NXF env variables
  • chore: update computeJobRole and headJobRole validation
  • chore:Bump ebs-autoscale to version 2.4.6-6ce65d32 [ci fast]
  • chore: Add KMS permissions required by EBS autoscale
  • chore: Upgrade to Micronaut 3.4.x
  • chore: typography sync between tower and design
  • Full Changelog: v22.1.5-enterprise...v22.2.0-rc0-enterprise

22.1.6 - 15 Jul 2022

  • Patch invalid job transition to unknown status [5ac1a4fd]

22.1.5 - 7 Jun 2022

  • Fix perms for encrypted bucket [96f00f39]
  • Add the support for USR2 signal to launcher script [40c4ab68]

22.1.4 - 1 Jun 2022

  • Enable maintainers to create workspace secrets [2d1a225f]
  • Forward revision when creating a pipeline (#3203) [2ff2f171]
  • Change MOAB queue status command (#3219) [4eda7f90]

22.1.3 - 18 May 2022

  • Update Nextflow to 22.04.3
  • Bump nf-launcher:j17-22.04.3
  • Bump nf-jdk:corretto-11.0.15_up1

22.1.2 - 9 May 2022

  • fix: Add KMS permissions required by EBS autoscale with encrypted volumes [387ed6c3]
  • fix: Update HTTP content security policy to allow host URLs for frames and workers [327b27ac]
  • fix: Minor navigation error when removing unexistent CSV renderer component [a501225c]
  • fix: Issue downloading a report with containing a blank character [70ab2033]
  • fix: Nginx proxy pass decoding break query parameters with blank character [48a2ef6b]
  • fix: Kubernetes control plan URL only allow host name [1b4b1240][da552afc]
  • Bump ebs-autoscale to version 2.4.6-6ce65d32 [d52de172]

22.1.1 - 25 Apr 2022

  • Add EBS encrypt role policy at AWS forge creation (#2817) [ci fast]
  • Add TOWER_ENABLE_UNSAFE_MODE setting to allow cookies over HTTP (#3023) [69100d51]
  • Allow NXF env variables (#3026) [553015d8]
  • Fix azcopy cache commands (#3022) [4932a54d]
  • Fix AES regular expression [a7b1ed02]
  • Fix update CSP to allow captcha frame [a984ec39]
  • Fix download of task log files (#3004) [3389a8d7]
  • Fix Dataset table is not rendered in Safari [ab297ff4]
  • Fix avoid analytics service making calls when there's no analytics url (#2991) [fd56afab]
  • Fix NF version in welcome page [c5c8492c]
  • Remove log trace from workflow limiter [64f8161e]
  • Improve cloud price download logs [a0e69b57]
  • Bump nf-launcher:j17-22.04.0 [9e55c873]
  • Bump nf-jdk:corretto-11.0.15 as base image [1832c282]

22.1.0 - 12 Apr 2022

  • Add secure cookies [e28a3388]
  • Add GetLogsEvents perm to AWS Batch instance role [04b18668]
  • Add credentials view page [f3c63483]
  • Add ECS pull strategy in user-data template [e1b4914a]
  • Add root users environment when TOWER_ROOT_USERS variable is provided [e09db3e5]
  • Add Tower system message
  • Add support for JSON formatted logs [92122adb]
  • Add support for AWS agent and logging [6e68fd98][c080e9d4]
  • Add navigate back button to second level screens (#2578) (#2623) (5 weeks ago)
  • Add validation for SSH hostname and username [d0115de0][efb962bf]
  • Add config option to disable user private workspace [9e667bc0]
  • Add share run deprecation banner
  • Allow partial searches [b8788b38]
  • Allow the use S3 bucket work dir along with EFS or FSx mounts [368d5caa]
  • Upload encrypted files at AWS S3 [40b87a2e]
  • Use default listening port (80) [a64852d9]
  • Improve secrets obfuscation in log file [7e52c76b]
  • Improve EBS autoscaling [fe7fe728]
  • Increase tower config max size to 3500 character [a01ee72c]
  • Disable resume for failed workflows [3c2c7ad3]
  • Set max length validator to the workflow launch form fields [5326114b]
  • Check valid EFS and FSx mount points [633fdcd8]
  • Make Dataset api public (#2240) [2fd32c51]
  • Upgrade Angular 13
  • Upgrade Micronaut 3.x (#2364)
  • Upgrade logback to version 1.2.8 (#2418)
  • Bump log4js from 6.3.0 to 6.4.0 in /tower-web (#2535)
  • Bump base image nf-jdk:corretto-11.0.14_2
  • Bump nf-launcher 22.03.1-edge
  • Increase agent websockets payload size to 5Mb [5f3e5428]
  • 484005bd - Always retry NF process when using AWS sport instances
  • fe7fe728 - Improve EBS autoscaling (8 days ago)
  • 8dc800c2 - feature: improve parse the pipeline schema
  • Default to Nextflow DSL version 1 [e88a3e59]
  • Fix job status is updated in the in-memory tracker before running the job in the local CE platform (#2460) (3 months ago)
  • Fix normalize dataset name [fcbe417d]
  • Fix Allow dot in AWS ARN string [d5c5cd9e]
  • Fix issue with K8s compute env stalling in creating status [72c03cd9]
  • Fix set cookie acceptance cookie path to / e2e [ba0cae7a]
  • Fix EFS and FSx permission when job run with non-root user (#2659) [0e169bb9]
  • Fix reports at grid and agent platforms [ba397137]
  • Fix load SLURM CE details in view mode [80cc0e9b]
  • Fix Display dates with YYYY-MM-DD format on runs page [830606af]
  • Fix Unable to download execution log from a workflow with working directory specified just as "bucket" name [d025917c]
  • Fix Prevent the creation of Spot fleet role [95acea2c]
  • Fix Prevent deletion of an active workflow run [ba1f1ce9]
  • Fix Prevent XSS attacks when uploading a datatable file [#2944] (6d98210c)
  • 8759d92e - Validate launch/re-launch action depending the user role
  • d6113805 - Bump base image nf-jdk:corretto-11.0.14_2 [ci fast]

21.12.3 - 31 Mar 2022

  • Bump base image nf-jdk:corretto-11.0.14_2 [8cc71b91]

21.12.2 - 31 Mar 2022

  • Create /.nextflow folder in backend container [333a8a68]
  • Fix: issue with K8s compute env stalling in creating status [3745e793]
  • Fix: Upload encrypted files at AWS S3 [716d2938]
  • Fix: EFS/FSx permission when using non-root container (#2659) [002f4426]
  • Bump nf-launcher:j17-21.10.6 [8b3d6490]

21.12.1 - 3 Feb 2022

  • Disable H8 stats verbose logging [7e5e08b0]
  • Enable root users environment when TOWER_ROOT_USERS variable is provided [390e079a]
  • Fix: reports endpoint exception on NF cli workflows [c310c3cf]

21.12.0 - 17 Jan 2022

  • Add shared workspace feature
  • Add Pipeline reports feature [preview]
  • Add Dataset public APIs
  • Add Tower agent reverse connection
  • Add Dataset api public ci fast [942f3f4e3]
  • Prevent the use of master as default branch (#2499) [791f45a11]
  • Update resources descriptions [538069df9]
  • Allow the use of S3 as work directory when using EFS and FSx mounts [6199d8fd6]
  • Display dates with YYYY-MM-DD format on runs page [5d2f3215a]
  • Change email template office address [5edfa3a26]
  • Increase agent websockets payload size to 5Mb [4ce9af8f2]
  • Fix: auto-normalize inline credentials name (#2405) [9d5453716]
  • Fix: prevent making multiple get pipeline info requests in workflow launch form ci skip [e21619bd1]
  • Fix: set 'Launch.resumeLaunchId' only if it's a resume. (#2427) [a784e635b]
  • Fix: possible connectionId null reference exception ci skip
  • Bump nf-launcher 21.10.4 based on correto:17.0.1 based image

21.10.3 - 3 Feb

  • Enable root users environment when TOWER_ROOT_USERS variable is provided [0ba7190e0]

2021

21.10.2 - 10 Dec

  • Fix NPE error when marking unknown status
  • Bump nf-launcher 21.10.5

21.10.1 - 8 Dec

The 21.10.x release series starts with v21.10.1.

  • Add Container registry creds for Azure
  • Add Datasets feature
  • Add Support custom CE environment variables
  • New Workflows Runs list page
  • Add support for custom landing page
  • Add Display job info on workflow general panel (#2142) (#2151)
  • Make hidden params a part of pipeline input form even if not shown + small fix (#2134)
  • Parallelize Az metadata retrieval
  • Fix Make hidden params a part of pipeline input form even if not shown + small fix (#2134)
  • Fix Validate final values of config properties on startup (#2100)
  • Fix redisson default connection pool size (#2229)
  • Fix Return a bad request when workspaceId is not parsable (#2220) #2205
  • Fix race condition on repo pull (#2110)
  • Fix grid platform default launch dir (#2037)
  • Fix Redirect to the Runs page after launch (#2057)
  • Fix Discard deleted entities from name validation queries and rename them (#2052)
  • Improve landing page config #1996 #748
  • Fix Download hangs when streaming a S3 file (#2005)
  • Hide ebsBlockSize field from aws manual config (#2004)
  • Refactor Google LifeScience head job execution (#1981)
  • Make sure to authenticate the Google storage (#1984)
  • Use amazoncorretto:11.0.13 as base image
  • Minor schema fetching improvement (#2183)
  • Make sure the workflows list query returns the workflows in a workspace even if they have been starred by other users (#2174)
  • Bump nf-launcher 21.10.4

21.06.5 - 10 Dec

  • Increasing the throttling rate on the ECS agent metadata endpoint (#2338) [51a519691]
  • Bump nf-launcher 21.10.5

21.06.4 - 25 Nov

  • Increasing the throttling rate on the ECS agent metadata endpoint (#2338)
  • Bump nf-launcher 21.10.3

21.06.3 - 19 Nov

  • Bump nf-launcher 21.10.1

21.06.2 - 5 Oct

  • Fix race condition on repo pull when using Kubernetes platform (#2110) [90b1dbe7c]
  • Hide ebsBlockSize field from aws manual config (#2004) [24650f47c]
  • Connection pool properties log can leak sensitive data [1878a2e4f]
  • Changing workspace multiple requests fix (#1985) [5f66be4b0]
  • Make sure to authenticate the Google storage (#1984) [398897422]
  • Fix Altair infoCli method [f5226d03d]

21.06.1 - 27 Aug

  • Fix OpenId attributes blows up response header [7b3c5ae58]
  • Fix Mention in the Get started page how setup tower workspace id [b16ead35a]
  • Fix Tune AWS client caching timeout f4ffe10d5
  • Fix Pipeline params JSON parsing on Windows client #1949
  • Fix Add better control of cron/redis config (#1944) [45579b5bd]
  • Fix DB migration detected table on foreign schema - Bump migtool 1.0.2 705c905db
  • Fix for the case when blur event handler was executed before chip selection event handler #1932
  • Fix Bug 1926/Modify bootDiskSize Config Param #1931

21.06.0 - 26 Jul

  • Add Support for AWS Host credentials and role-base permissions
  • Add Support for AWS EFS storage
  • Add ability to specify custom AWS cli path
  • Add AWS regions eu-south-1 and af-south-1
  • Add uploadChunkSize configuration parameter to abstract k8 provider (#1820)
  • Limit compute env error message length
  • Invalidate compute envs associated to deleted credentials
  • Fix launch form pipelineParameters after navigating to pipeline input form (#1847)
  • Fix error report for missing invalid/creds
  • Fix GitHub action creation
  • Fix Prevent GH delete action hook exception
  • Display team id in team page
  • Disable index.html caching in nginx.config
  • Bump nextflow launcher 21.04.3
  • Bump groovy 3.0.8

21.04.9 - 2 Aug

  • Fix Nextflow plugins deps

21.04.8 - 14 Jul

  • Improve error report for missing/invalid AWS creds [b5c550236]
  • Do not trigger config profiles field reset after patching the workflow launch form (#1836) [f863c8cbb]

21.04.7 - 21 Jun

  • Add head service account to deployment pod (#1773) [6e0e7281f]
  • Parse profiles using the correct revision at launch time (#1572) [e78eda2f2]

21.04.6 - 21 Jun

  • Change schema and default params usage (#1737) [f938c7236]
  • Fix GitHub action creation (#1721) [b24f0cfb8]
  • K8s use deployment for service pod (#1735) [1af27810c]
  • Fixed the case when the dropdown was over-shadowing other fields (#1714) [baacf92cc]

21.04.5 - 8 Jun

  • k8s head pod custom specs (#1668) [d82a864c8]
  • Fix action update settings (#1679) [a485c5d75]
  • Allow selecting empty values for schema dropdown fields (#1674) [d27e5b905]

21.04.4 - 3 Jun

  • Fix missing scm server & platform 3dc89ece5

21.04.3 - 2 Jun

  • Fix pattern test validator when the value is empty (#1652) [3cc2923ec]
  • Fix navigation dropdown display when user has no CreateOrganization permission (#1655) [5018fd956]

21.04.2 - 1 Jun

  • Fix FSx creation failure

21.04.1 - 31 May

  • Add timeout on AWS Forge waiters
  • Add log response to UI error message (#1602) [2d705289c]
  • Reorganize login page (#1635) [9a46f393a]
  • Add support for BitBucket server [8c09241e3]
  • Fix Missing GitLab token creds (#1631) [c188a76b2]
  • Fix action launch user (#1615) #1611 [691fe4c9d]
  • Use RegExp.test for json schema pattern validation + small pipeline input form fix (#1619) [d9d2cd317]
  • Do not config mail proxy using global proxy settings (#1626) [e1c8b1dab]
  • Fix admin project security vulnerabilities (#1637) [972255faf]

21.04.0 - 21 May

  • New organizations feature
  • New teams feature
  • New workspace feature
  • New launchpad feature
  • Add support for private Git repositories
  • Add support for Nextflow timeline downloads
  • Fix issues with Compute environment status reporting
  • Update Nextflow runtime to version 21.04.0

21.02.5 - 12 May

  • Fix S3 log downloads when using fusion feature

21.02.4 - 29 Apr

  • Bump nexflow 21.04.0-edge required to fix Bitbucket server

21.02.3 - 21 Apr

  • Fix cloud price downloader using Seqera Labs endpoint
  • Fix Error message when S3 bucket is not accessible

21.02.2 - 14 Apr

  • Fix missing commit ID when resuming execution fails to start

21.02.1 - 12 Apr

  • Fix support for custom bitbucket servers
  • Bump Nextflow launcher 21.04.0-edge

21.02.0 - 16 Mar

  • Add Azure Batch provider
  • Add Altair PBS pro provider
  • Add sessionId to workflows search-box criteria
  • Add support for multiple GLS zones
  • Add Grid provider head job options
  • Add support for AWS Batch cost percentage
  • Add Azure Batch Forge
  • Add support for Grid Engine batch scheduler
  • Add K8s service pod
  • Add support for Tower license
  • Improve detection of NF config profiles #1074
  • Fix issue on work dir path composition with ending slash
  • Fix issue when retrieving non-existing file via SSH/SCP
  • Fix issue resolving non-canonical GitHub/Gitlab project name #353
  • Fix issue with AWS Batch allocation strategy #931
  • Fix phantom job unknown status
  • Fix Prevent requeuing of mail with invalid addresses
  • Fix issue on creating AWS CE with manual config
  • Update backend base image to corretto:11.0.10
  • Upgrade to Angular 11
  • Use Kubernetes Java-client 10.0.1
  • Update nf-launcher to 21.03.0-edge

20.12.4 - 23 March

  • Add support for AWS marketplace

20.12.2 - Feb 16

  • Fix phantom job status
  • Fix invalid email rejection

20.12.1 - 21 Jan

  • Fix head job submission to head queue when using batch schedulers eg. Slurm, GridEngine, LSF.

20.12.0 - 11 Jan

  • Add support for Kubernetes clusters
  • Add support for AWS EKS clusters
  • Add support for Google GKE clusters
  • Add support for Launch stub-run feature
  • Add AWS Batch Fusion mounts
  • Enhanced security, API uses bearer auth
  • System security improvements
  • Upgrade Java runtime to version 11
  • Upgrade Micronaut runtime to version 2.1
  • Upgrade Nextflow launcher to version 20.12.0-edge

20.10.4 - 11 Jan

  • Backend container security fixes
  • Improved SSH client debugging

2020

20.10.3 - 30 Nov

  • Fix migration tool when using MariaDB
  • Fix execution issue with Batch forge when creating a new FSx file system
  • Fix invalid warn message

20.10.2 - 2 Nov

  • Add support for TOWER_LAUNCH_CONTAINER env var [6fd06581f]
  • Allow pre-run script to modify launch env [56ed5cca1]
  • Fix ebs autoexpand volume issue + add ebs block size [cbdb8b1af]
  • Disable cache on problematic cached query (#608) [11ef28e10]

20.10.1 - 27 Oct

  • Updated Nextflow launcher container

20.10.0 - 22 Oct

  • Add Workflow sharing feature
  • Add support for Slurm batch cluster
  • Add support for IBM LSF batch cluster
  • Add customizable navbar menu
  • Add built-in support for MariaDB
  • Add built-in support for Google SSO
  • Add auth allow-list emails
  • Update Java mail 1.6.2
  • System security improvements

20.08.0 - 28 Aug

  • Add support for AWS FSx mount name to Launch feature
  • Add Batch Forge option to to Launch feature
  • Add support for GPU instances to Launch feature
  • Add Execution and tasks logs view & downloads features
  • Add support for Compute env AWS advanced options
  • Add Compute environment primary option feature
  • Add Pipeline Actions
  • Add support for GA4GH WES API (beta)
  • Add status & process name filtering to dashboard
  • Add favicon for dark theme
  • Add login pass-through mechanism
  • Fix AWS Batch workflow cancellation
  • Fix issue when launching projects w/o config file
  • Fix issue on port and scheme forwarding
  • Fix local repositories configuration issue
  • Improve Workflow general stats tooltips
  • Update launch base image to AWS corretto:262
  • Update MN version 1.3.7

20.06.1 - 12 Aug

  • Fix Reverse proxy scheme and port forwarding when using local docker environment

20.06.0 - 16 Jun

  • Add Pipeline Launch feature
  • Add Pipeline execution cancellation
  • UI looks & feel improvements
  • Security improvements
  • OAuth login improvements
  • Add Tomcat DB connection pool
  • Upgrade Micronaut runtime to 1.3.3

20.05.1 - 12 May

  • Path OpenID connect upgrading MN security to 1.2.3
  • Add TOWER_SECURITY_LOGLEVEL env variable for security module debugging

20.05.0 - 28 Apr

  • Add support for OpenId connect
  • Improve K8s deployment descriptors
  • Fix critical issue saving tasks
  • Add limit to max records returned
  • Fix invalid tag deserialization error