Haplocheck

Haplocheck detects in-sample contamination in mtDNA or WGS sequencing studies by analyzing the mitchondrial content

https://github.com/genepi/haplocheck/

File search patterns

haplocheck:
  contents: "\"Sample\"\t\"Contamination Status\"\t\"Contamination Level\"\t\"Distance\"\
    \t\"Sample Coverage\""
  num_lines: 10