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Changelog: MultiQC

MultiQC v1.31

Adding new module for Xenium analysis, 10x Genomics Xenium spatial transcriptomics quality control report.

The parquet format is stable since 1.29, renaming the output file from BETA-multiqc.parquet to multiqc.parquet.

MultiQC v1.27.1

Fixes and improvements in AI summaries:

  • AI summaries should now work with bioconda install multiqc without additional dependencies
  • Supporting other LLM providers with a custom endpoint passed through the command line (docs)
  • Option to anonymize sample names

MultiQC v1.25.1

Python 3.13, bugs fixed, improved sample grouping UI, and handling freezes in containers with incompatible architectures.