HiFi-Trimmer

note

Filters and trims adapter sequences from HiFi reads using BLAST.

https://github.com/sanger-tol/hifi-trimmer

Parse HiFi-Trimmer JSON summaries and optionally merge sample totals from matching samtools stats reports.

File search patterns

hifi_trimmer:
  contents: '"total_reads_trimmed"'
  fn: '*.json'
  num_lines: 10