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telseq

note

Estimates telomere length from whole genome sequencing data (BAMs)

https://github.com/zd1/telseq

Telomeres play a key role in replicative ageing and undergo age-dependent attrition in vivo. TelSeq measures average telomere length from whole genome or exome shotgun sequence data.

File search patterns​

telseq:
  contents: "ReadGroup\tLibrary\tSample\tTotal\tMapped\tDuplicates\tLENGTH_ESTIMATE"
  num_lines: 3