CheckM2
note
Assesses microbial genome quality using machine learning
The module parses the quality_report.tsv
files generated by CheckM2.
All statistics for all samples are saved to multiqc_data/checkm2-first-table.txt
.
Tested with CheckM2 v1.0.1 and v1.0.2
File search patterns
checkm2:
contents: "Name\tCompleteness\tContamination\tCompleteness_Model_Used\tTranslation_Table_Used"
num_lines: 10