CheckM2

note

Assesses microbial genome quality using machine learning

https://github.com/chklovski/CheckM2

The module parses the quality_report.tsv files generated by CheckM2. All statistics for all samples are saved to multiqc_data/checkm2-first-table.txt.

Tested with CheckM2 v1.0.1 and v1.0.2

File search patterns

checkm2:
  contents: "Name\tCompleteness\tContamination\tCompleteness_Model_Used\tTranslation_Table_Used"
  num_lines: 10