GLIMPSE

Low-coverage whole genome sequencing imputation

https://odelaneau.github.io/GLIMPSE/

The program GLIMPSE2 is based on the GLIMPSE model and designed for reference panels containing hundreds of thousands of reference samples, with a special focus on rare variants. The concordance rates values are displayed in a scatter plot, with the option to switch between the different concordance metrics.

The supported files are generated from the GLIMPSE2_concordance command. The following files are supported:

• *.error.spl.txt
• *.error.grp.txt

File search patterns

glimpse/err_grp:
  fn: "*.error.grp.txt.gz"
  num_lines: 1
glimpse/err_spl:
  fn: "*.error.spl.txt.gz"
  num_lines: 1