Feature updates and improvements​

Pipelines​

• Showed wall time for running workflows with periodic updates.

Access control​

• Added visibility toggle button to secrets in Secrets table.
• Added secrets list filtering by type.
• Added ability to hide secret inline in Manage Secrets table.

Compute environments​

• Added warning when Azure Batch default VM image was upgraded from Ubuntu 20.04 to 24.04.
• Updated default Azure Batch VM image from Ubuntu 20.04 to 24.04.

General​

• Added pipeline version tracking to Runs table.

Feature updates and improvements​

General​

• Added OSC 8 hyperlinks to task hashes in progress output by @bentsherman in #6799
• Improved documentation of workflow outputs by @bentsherman in #6822

Dependencies​

• Bumped ch.qos.logback@1.5.26 to fix false version mismatch warning in shadow JAR by @pditommaso in 0b97f4a
• Bumped ch.qos.logback@1.5.25 (CVE-2026-1225) by @pditommaso in 97dec3a
• Bumped com.gradleup.shadow@9.3.1 (CVE-2025-68161) by @pditommaso in d31e6ed

Bug fixes​

Language features​

• Fixed listDirectory() to follow symbolic links by @bentsherman in #6821

General​

• Fixed JGit resources not being closed in CLI commands by @pditommaso in #6795

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.01.1-edge

Feature updates and improvements​

Studios​

• (Public preview) Added SSH connectivity to Studios which enables direct connection to running Studio sessions using standard SSH clients, supporting VS Code Remote SSH and terminal access. See Studios SSH configuration for more information.

Pipelines​

• Added custom schema support to pipeline versions.
• Added edit launch pipeline.
• Enabled custom schema retrieval for pipeline versions.

See Pipeline versioning for more information.

Access Control​

• Removed participants on workspace deletion.
• Improved error message when deleting custom roles.
• Added pagination to roles list page.
• Added the ability to view an effective permissions summary for any user/workspace combination in the UI or via API.
• Added the ability to reset a custom role's permissions to match any predefined role (Admin, Maintain, Launch, Connect, View).

Custom roles quota enforcement​

The maxCustomRolesPerOrg quota is now enforced on custom role creation. Organizations at or near their quota limit will be unable to create additional custom roles. Review your organization's custom role usage if you need to create additional roles. Contact support to adjust your quotas if needed.

General​

• Restored custom navigation menu support in user dropdown.
• Updated styles for container responsiveness and padding adjustments and footer.
• Added only current page in task pagination.
• Added storage for SSH public keys for use in Studios.

Bug fixes​

• Cleared parameters when changing between pipeline with and without parameters.
• Fixed correctly updated versions list when version is published.
• Prevented re-assignations of pipeline.launch when working with versions.
• Updated schema when schemaName field value changes.
• Prevented adding empty parameters when reseting parameters form with defaults after config profile change.

Upgrade steps​

This release maintains backward compatibility with version 25.2.x.

See Upgrade deployment for installation guidance.

Feature updates and improvements​

Language features​

• Removed unnecessary runtime checks with strict syntax by @bentsherman in #6539

AWS Batch​

• Added isCompleted check in getNumSpotInterruptions by @munishchouhan in #6806

Dependencies​

• Bumped nf-amazon@3.4.4 by @pditommaso
• Bumped nf-google@1.23.5 by @pditommaso
• Bumped nf-tower@1.17.5 by @pditommaso

Bug fixes​

Language features​

• Fixed false error with optional param by @bentsherman in #6811
• Fixed false error with multi-line tuple assignment in v2 parser by @bentsherman in #6786
• Fixed false error in v2 parser when including config file from http url by @bentsherman in #6753

General​

• Fixed LogsCheckpoint thread blocking shutdown for up to 90 seconds by @pditommaso in #6787

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v25.10.4

Feature updates and improvements​

General​

• Closed pairing session on heartbeat when record is missing from Redis by @pditommaso in #977

Dependencies​

General​

• Bumped libseqera dependencies by @pditommaso in #978

Full changelog: https://github.com/seqeralabs/wave/compare/v1.32.2...v1.32.3

Feature updates and improvements​

Access control​

• Added Duplicate button to Roles page, allowing users to create new roles based on existing role permissions.

Pipelines​

• Refactored default pipeline version handling by removing ensureDefaultVersion support and improving version management logic.
• Added new pipeline version update endpoint (POST /pipeline-versions/{versionId}) for updating specific pipeline versions independently from the default version.
• Fixed PipelineVersionLaunchComposite query logic to properly return null for non-existent pipeline versions instead of creating invalid composite objects.

Compute environments​

• Updated default Azure Batch VM image to Ubuntu 24.04 (SKU 2404).

General​

• Added custom schema support to pipeline forms, allowing users to specify custom schema names or URLs for pipeline configuration.
• Added centralized design system tokens (tokens.ts) with functional colors, semantic colors, and component sizes for consistent UI styling.
• Added auto-detection of form controls in ExpansionPanelComponent via the new wtExpansionPanelDetail directive, reducing boilerplate code and enabling reactive updates to collapsed panel summaries.
• Enabled custom pipeline schema retrieval via the /pipelines/{pipelineId}/schema endpoint, with improved error handling and refactored transaction management.

Feature updates and improvements​

Language features​

• Allowed collection-type params to be loaded from files by @bentsherman in #6675
• Enabled v2 syntax parser by default by @bentsherman in #6643
• Improved config syntax errors by @bentsherman in #6721
• Improved error message for invalid config statements by @bentsherman in #6804
• Improved error messages for workflow outputs by @bentsherman in #6785
• Moved task hashing logic to TaskHasher class by @bentsherman in #6572

AWS Batch​

• Added aws.batch.forceGlacierTransfer config option by @munishchouhan in #6700

Google Batch​

• Refactored GoogleBatchTaskHandler.newSubmitRequest for reduced complexity by @pditommaso in #6687

Kubernetes​

• Added time-based caching for K8sConfig.getClient() by @munishchouhan in #6742

Configuration​

• Supported multiple config option types in config spec by @bentsherman in #6720

General​

• Added accelerator request to trace record by @munishchouhan in #6703
• Added CloudCacheConfig to register cloudcache config options by @pditommaso in #6774
• Added markdown output mode to lint command by @ewels in #6715
• Added missing provider credentials when updating the bare repo in multi-revision assets by @jorgee in #6698
• Added warning stats to lint summary output by @ewels in #6714
• Added workflow manifest metadata to execution report by @bentsherman in #6689
• Detected conda explicit files by content instead of extension by @bentsherman in #6713
• Excluded nf-test.config from lint by default by @ewels in #6716
• Used conda-forge and bioconda channels by default by @Midnighter in #5423

Dependencies​

• Bumped Groovy to 4.0.30 by @pditommaso in #6747
• Bumped Spock 2.4 by @pditommaso in #6681

Bug fixes​

Language features​

• Fixed caching of task ext properties with the strict parser by @bentsherman in #6696
• Fixed compiler error in v2 parser with enums by @bentsherman in #6781
• Fixed different task hash with v2 parser by @bentsherman in #6789
• Fixed false error in v2 parser when including config file from http url by @bentsherman in #6753
• Fixed false error with multi-line tuple assignment in v2 parser by @bentsherman in #6786
• Fixed false error with optional param by @bentsherman in #6811
• Fixed issue with topic file emissions in typed processes by @bentsherman in #6688
• Fixed params inclusion across modules in v2 parser by @bentsherman in #6766
• Fixed resolution of nested Groovy class in v2 parser by @bentsherman in #6744
• Fixed type inference in v2 ConfigDsl by @bentsherman in #6800

AWS Batch​

• Fixed AWS Batch spot instance detection by @munishchouhan in #6722
• Fixed isCompleted check in getNumSpotInterruptions by @munishchouhan in #6805

S3​

• Fixed error when checking whether an S3 bucket exists by @jorgee in #6706

Kubernetes​

• Fixed K8s job fallback to not return incorrect zero exit code by @munishchouhan in #6746

General​

• Fixed fetching new remote branch in multi-revision mode by @jorgee in #6733
• Fixed lint error formatting for errors at end of line by @ewels in #6717
• Fixed LogsCheckpoint thread blocking shutdown for up to 90 seconds by @pditommaso in #6787
• Fixed nextflow inspect not applying container settings from config by @adam-novak in #6736
• Fixed spurious WARN when workflow fails before onFlowBegin by @pditommaso in #6816

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.01.0-edge

Feature updates and improvements​

Compute environments​

• Allowed arbitrary Security Group/subnet values and improved error feedback.

Pipelines​

• Changed to only show current page number of workflows pagination.
• Added template role selector to custom role form.
• Added custom schema add edit launch pipeline.

Data Explorer​

• Implemented member details screen.
• Removed participants on workspace deletion.
• Improved error message when deleting custom roles.

General​

• Assigned pipeline.launch to the default version.

Bug fixes​

User interface​

• Fixed incorrect icons displayed throughout the application.
• Fixed Role View page paddings.
• Fixed cost estimates to display with 2 decimal places for consistency.
• Improved tasks table default pagination from 10 to 25 items.

Workflows and pipelines​

• Fixed pagination state loss when navigating back to workflow and task lists.
• Fixed pipeline launch configuration being incorrectly reassigned when working with pipeline versions.
• Fixed empty parameters being added after changing configuration profiles.

Studios​

• Fixed error handling when Studio version information is unavailable.

Access control​

• Fixed SSH key creation failing due to missing ID generator.

Feature updates and improvements​

Access control and roles​

• Consolidated user and team management into an Access Control menu.

Pipeline and workflow management​

• Added operation to delete from workspace by userId.
• Support keywords to search pipeline versions by name and hash.
• Added username dynamic resource label placeholder for workflow labeling.

User interface​

• Added CE_FORMS_V2 compute environment form page.
• Show only current page in task pagination.
• Implement advanced search help popover in version list.

Bug fixes​

Data Explorer​

• Fixed data links not displaying until all are fetched - now shows incremental loading.

Studios​

• Enable Fusion in Azure Batch with Ubuntu 24.04 by installing custom AppArmor profile.
• Studio no longer throws error when failing to fetch Studio connect-client version label.

Feature updates and improvements​

General​

• Use lib-data-range-redis from libseqera by @pditommaso in https://github.com/seqeralabs/wave/pull/964
• Removed GitHub Action for generating Seqera Docs changelog. by @ewels in https://github.com/seqeralabs/wave/pull/965

Bug fixes​

General​

• Fixed copy and download button in Wave reports by @munishchouhan in https://github.com/seqeralabs/wave/pull/969

Full changelog: https://github.com/seqeralabs/wave/compare/v1.32.1...v1.32.2