Wave v1.17.2
Feature updates and improvements
- Improved inspect view by @munishchouhan in https://github.com/seqeralabs/wave/pull/795
Full changelog: https://github.com/seqeralabs/wave/compare/v1.17.1...v1.17.2
Full changelog: https://github.com/seqeralabs/wave/compare/v1.17.1...v1.17.2
A change in the nf-core tools template made config profile search in the pipeline launch form inconsistent in Platform as it's prepended by a ternary operator. This release introduces a fix that improves config profile name parsing.
Full changelog: https://github.com/seqeralabs/wave/compare/v1.17.0...v1.17.1
Full changelog: https://github.com/seqeralabs/wave/compare/v1.16.8...v1.17.0
Bugfix release to improve stability.
removeLogs
is falseserveFusion
fusion {
enabled = true
containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.5.1-amd64.json'
}
For ARM64 CPU architecture, use containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.5.1-arm64.json'
.
errorStrategy
and maxRetries
default Nextflow config for AWS and GCP launches. Platform will not overwrite existing error strategy coded in the pipeline repository.errorStrategy
and maxRetries
.You can revert to the default setting used in Nextflow prior to 24.10 with the following configuration options:
aws.batch.maxSpotAttempts = 5
google.batch.maxSpotAttempts = 5
Set task.maxRetries
to a non-zero value to restore Platform to prior behaviour.
How do I retry Spot failures while making them visible?
There is no mechanism in Nextflow to specifically report Spot retries. However you can set process.maxRetries = 5
to retry all failures (including Spot reclamations) a specified number of times before failure.
errorStrategy
default Nextflow config for AWS and GCP launches. The Nextflow job now correctly terminates after pipeline completion.schemaName
when editing a pipeline.preferred_username
as fallback email field for OIDC login.lastUpdated
for existing duplicates. Going forward, preference is given to the credentials updated last in the situation when there are multiple candidates. Additionally a duplicate check is added when creating new credentials, to avoid new duplicate cases.mainScript
path.Full changelog: https://github.com/seqeralabs/wave/compare/v1.16.7...v1.16.8