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Changelog

Seqera Cloud v24.2.0_cycle25

Seqera Cloud

Feature updates and improvements​

  • Data Studios
  • Quick Launch now accepts pipelines that do not have a branch named master.
  • Improved query times on some clean up job queries.
  • NF Launcher image is now by default pulled from cr.seqera.io public registry instead of quay.
  • The new Launch Form is now available in Quick Launch and personal workspaces.
  • Improved fetching of the cloud cost estimation for Google Cloud Platform's (GCP) spot instances.
  • ECS container timeout configuration is now defaulted to 10 minutes (ECS_CONTAINER_CREATE_TIMEOUT=10m,ECS_CONTAINER_STOP_TIMEOUT=10m,ECS_MANIFEST_PULL_TIMEOUT=10m).

Bug fixes​

  • If the revision wasn't specified in Quick Launch, schemas weren't correctly fetched.
  • Retrieving managed identity IDs on updates resulted in the incorrect managed identity being displayed.
  • Start in new tab from the Data Studio form didn't navigate back the main tab to Data Studios page.

Wave v1.13.0

Wave

Feature updates and improvements​

Bug fixes​

Breaking​

  • This version introduces some changes in build and jobs state metadata stored in Redis. Make sure no jobs are running while deploying this version.

Full Changelog: https://github.com/seqeralabs/wave/compare/v1.12.4...v1.13.0

Nextflow 24.09.0-edge

Nextflow
  • Add Fusion version pinning info to Fusion config scope
  • Add container tip in the task error report
  • Add support for Java 23
  • Add Platform workflow prefix in AWS Batch job names
  • Fix AWS spot attempts with zero value
  • Fix Azure Fusion env misses credentials when no key or SAS provided
  • Fix CI build taking only the commit msg header
  • Fix Inconsistency with camelCase and kebab-case config param
  • Fix XPath default de-serializer issue
  • Fix failOnIgnore causes task monitor to stop submitting tasks
  • Fix large mermaid diagrams
  • Improve Wave build timeout handling
  • Include additional fields to manifest
  • Remove mini from Flux submit command
  • Update container handling with charliecloud
  • Update Documentation structure
  • Update nextflow install docs
  • Bump groovy 4.0.23
  • Bump nf-wave@1.6.0
  • Bump nf-azure@1.10.0
  • Bump nf-amazon@2.9.0

https://github.com/nextflow-io/nextflow/releases/tag/v24.09.0-edge

MultiQC v1.25.1

MultiQC

Python 3.13, bugs fixed, improved sample grouping UI, and handling freezes in containers with incompatible architectures.

Fusion v2.4.4

Fusion

Bugfix release to improve stability.

Feature updates and improvements​

  • Azure: Prefer Nextflow-provided SAS token for authentication
  • Define a default exit code 174 on Fusion IO error

Bug fixes​

  • Move folders that contain subfolders and big files
  • Propagate truncating to zero to remote storage
  • File moves overwriting files scheduled for upload

How to pin this version​

fusion {
  enabled = true
  containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.4-amd64.json'
}
info

For ARM64 CPU architecture, use containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.4-arm64.json'.

Seqera Cloud v24.2.0_cycle24

Seqera Cloud

Feature updates and improvements​

  • Data Studios
    • Add direct Data Explorer browse link to mounted data items.
    • Make Studio details page tabs routable.
  • Data Explorer
    • Highlight invalid custom datalinks.
    • Remove folder validation.
  • Updated Azure service principal credentials.
  • Define cache configuration once, only override changes.
  • Disable AWS and Google Batch spot instance auto retry.
  • Update 204 pipeline schema response description.
  • Patch workflow revision.
  • Render Parameters UI correctly with new schemas based on 2020-12 draft.
  • Upgrade to Angular 16.
  • Pipeline launch form: Delegate form creation to a form builder service.

Bug fixes​

  • Connection to Redis SSL server.
  • pairingId declaration in API schema.
  • Copying empty list for cloud data links.
  • Visual glitches in launch form.
  • Datalink status always null.
  • Update last used field in compute environment when creating a data studio job.
  • Terminated by Tower error.