Changelog
Nextflow 24.09.0-edge
- Add Fusion version pinning info to Fusion config scope
- Add container tip in the task error report
- Add support for Java 23
- Add Platform workflow prefix in AWS Batch job names
- Fix AWS spot attempts with zero value
- Fix Azure Fusion env misses credentials when no key or SAS provided
- Fix CI build taking only the commit msg header
- Fix Inconsistency with camelCase and kebab-case config param
- Fix XPath default de-serializer issue
- Fix failOnIgnore causes task monitor to stop submitting tasks
- Fix large mermaid diagrams
- Improve Wave build timeout handling
- Include additional fields to manifest
- Remove
mini
from Flux submit command - Update container handling with charliecloud
- Update Documentation structure
- Update nextflow install docs
- Bump groovy 4.0.23
- Bump nf-wave@1.6.0
- Bump nf-azure@1.10.0
- Bump nf-amazon@2.9.0
https://github.com/nextflow-io/nextflow/releases/tag/v24.09.0-edge
MultiQC v1.25.1
Python 3.13, bugs fixed, improved sample grouping UI, and handling freezes in containers with incompatible architectures.
Fusion v2.4.4
Bugfix release to improve stability.
Feature updates and improvements
- Azure: Prefer Nextflow-provided SAS token for authentication
- Define a default exit code 174 on Fusion IO error
Bug fixes
- Move folders that contain subfolders and big files
- Propagate truncating to zero to remote storage
- File moves overwriting files scheduled for upload
How to pin this version
fusion {
enabled = true
containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.4-amd64.json'
}
info
For ARM64 CPU architecture, use containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.4-arm64.json'
.
Wave v1.12.4
Bug fixes
- Fix build seceded and status response by @pditommaso in 8a760b39
Full changelog: https://github.com/seqeralabs/wave/compare/v1.12.3...v1.12.4
Seqera Cloud v24.2.0_cycle24
Feature updates and improvements
- Data Studios
- Add direct Data Explorer browse link to mounted data items.
- Make Studio details page tabs routable.
- Data Explorer
- Highlight invalid custom datalinks.
- Remove folder validation.
- Updated Azure service principal credentials.
- Define cache configuration once, only override changes.
- Disable AWS and Google Batch spot instance auto retry.
- Update 204 pipeline schema response description.
- Patch workflow revision.
- Render Parameters UI correctly with new schemas based on 2020-12 draft.
- Upgrade to Angular 16.
- Pipeline launch form: Delegate form creation to a form builder service.
Bug fixes
- Connection to Redis SSL server.
pairingId
declaration in API schema.- Copying empty list for cloud data links.
- Visual glitches in launch form.
- Datalink status always null.
- Update last used field in compute environment when creating a data studio job.
Terminated by Tower
error.
Wave v1.12.3
Bug fixes
- Fix build status completion of submit exception by @pditommaso in 3c3af360
- Fix Singularity build mounts by @pditommaso in 3b338b29
Full changelog: https://github.com/seqeralabs/wave/compare/v1.12.2...v1.12.3
Wave v1.12.2
Feature updates and improvements
- Refactor container build service by @pditommaso in 1a858c12
- Remove unused code by @pditommaso in 268c76ea
Bug fixes
- Fix remove entries permanently from stream once consumed by @pditommaso in adfad9d6
Full Changelog: https://github.com/seqeralabs/wave/compare/v1.12.1...v1.12.2
Wave v1.12.1
Bug fixes
- Fix stream check for new messages by @pditommaso in 16a7e256
Full changelog: https://github.com/seqeralabs/wave/compare/v1.12.0...v1.12.1
Wave v1.12.0
Feature updates and improvements
- Change K8s delete job propagation policy to foreground by @munishchouhan in https://github.com/seqeralabs/wave/pull/595
- Improve blob cache reliability by @pditommaso in https://github.com/seqeralabs/wave/pull/596
- Add trusted builds timeout by @pditommaso in https://github.com/seqeralabs/wave/pull/600
- Update Wave rate limits by @gavinelder in https://github.com/seqeralabs/wave/pull/606
- Refresh Wave documentation by @jason-seqera in https://github.com/seqeralabs/wave/pull/516
- Links to Platform docs must be external to resolve by @jason-seqera in https://github.com/seqeralabs/wave/pull/613
- Improve container view page by @pditommaso in https://github.com/seqeralabs/wave/pull/615
- Add
/v1alpha2/container/token
by @munishchouhan in https://github.com/seqeralabs/wave/pull/609 - Add GET
/v1alpha2/container/token
in TypeSpec by @munishchouhan in https://github.com/seqeralabs/wave/pull/618 - Add job manager by @pditommaso in https://github.com/seqeralabs/wave/pull/605
- Add build in progress status in build page by @munishchouhan in https://github.com/seqeralabs/wave/pull/607
- Add bioinformatics example in docs by @munishchouhan in https://github.com/seqeralabs/wave/pull/621
- Converge job service by @pditommaso in https://github.com/seqeralabs/wave/pull/620
- Simplify tests by @pditommaso in https://github.com/seqeralabs/wave/pull/627
- Improve registry auth error handling by @pditommaso in https://github.com/seqeralabs/wave/pull/628
- Do not retry on build failure by @pditommaso in https://github.com/seqeralabs/wave/pull/632
- Remove unneeded timeout logic by @pditommaso in https://github.com/seqeralabs/wave/pull/633
- Deferred resources cleanup by @pditommaso in https://github.com/seqeralabs/wave/pull/636
- Add
containerImage
in scan by @munishchouhan in https://github.com/seqeralabs/wave/pull/635 - Use public repo for
s5cmd
by @pditommaso in https://github.com/seqeralabs/wave/pull/639 - Bump Trivy to 0.55 by @pditommaso in https://github.com/seqeralabs/wave/pull/638
- Update scan model by @pditommaso in https://github.com/seqeralabs/wave/pull/637
- Add entropy to Cron services by @pditommaso in https://github.com/seqeralabs/wave/pull/640
- Increase
cache-tower-client
to 1 min by @pditommaso in https://github.com/seqeralabs/wave/pull/641 - Improve blob cache info by @pditommaso in https://github.com/seqeralabs/wave/pull/644
- Improve job dispatcher by @pditommaso in https://github.com/seqeralabs/wave/pull/645
- Run docker process in background by @pditommaso in https://github.com/seqeralabs/wave/pull/647
Bug fixes
- Fix docs link by @jason-seqera in https://github.com/seqeralabs/wave/pull/611
- Fix outdated Platform docs URLs on
nextflow.mdx
by @llewellyn-sl in https://github.com/seqeralabs/wave/pull/612 - Fix failure duration by @pditommaso in https://github.com/seqeralabs/wave/pull/643
- Fix K8s job status detection by @pditommaso in https://github.com/seqeralabs/wave/pull/630
- Fix retry policy delay multiplier by @pditommaso in https://github.com/seqeralabs/wave/pull/629
- Fix too many requests error by @pditommaso in https://github.com/seqeralabs/wave/pull/610
Breaking changes
- Build status records used by this version are not compatible 1.11.x and earlier versions. No builds should be running while deploying this version
New Contributors
- @gavinelder made their first contribution in https://github.com/seqeralabs/wave/pull/606
Full changelog: https://github.com/seqeralabs/wave/compare/v1.10.4...v1.12.0