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Nextflow 25.12.0-edge

Nextflow

Feature updates and improvements​

  • Added listDirectory() to Path type and deprecate listFiles() by @bentsherman in #6581
  • Added default maxSpotAttempts for fusion snapshots in Google Batch by @fntlnz in #6652
  • Added onlyJobState option for SLURM executor by @tcutts in #6659
  • Added README files for all plugins by @pditommaso in #6660
  • Added runtimeClassName to the pod options by @alexpilotti in #6633
  • Added spot interruption tracking to trace records by @munishchouhan in #6606
  • Added URL encoding when revision name is used as HTTP query parameter by @jorgee in #6598
  • Added warnings to JSON output in lint command by @ewels in #6625
  • Added wave.build.template config option by @pditommaso in #6639
  • Checked Nextflow version before loading plugins by @bentsherman in #6591
  • Implemented Git multiple revisions by @jorgee in #6620
  • Refactored Google Batch getExitCode to imperative style by @pditommaso in #6649
  • Set local task exit status when time limit is exceeded by @bentsherman in #6592
  • Added Nextflow Development Constitution by @pditommaso in #6578
  • Added extra warnings as 25.10 is added to platform by @christopher-hakkaart in #6655
  • Added longer NXF_SYNTAX_PARSER descriptions by @christopher-hakkaart in #6637
  • Documented best practices for script and config params by @bentsherman in #6631
  • Fixed typos by @christopher-hakkaart in #6641
  • Improved preview feature warnings in documentation by @pditommaso in #6663
  • Updated note about AWS CLI by @christopher-hakkaart in #6626
  • Updated NXF_SYNTAX_PARSER callouts by @christopher-hakkaart in #6640

Bug fixes​

  • Fixed GitHub repository provider when providing token with auth property by @jorgee in #6662
  • Fixed optional param in params block by @bentsherman in #6657
  • Fixed String.format error when plugin URL contains percent chars by @pditommaso in #6651
  • Fixed validation of numeric types in params block by @bentsherman in #6656
  • Fixed WaveClient sending Bearer token to public S3 URLs by @pditommaso in #6672
  • Fixed tolerate spaces in $NXF_TASK_WORKDIR by @TheLostLambda in #6421

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v25.12.0-edge