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MALT

Aligns of metagenomic reads to a database of reference sequences (such as NR, GenBank or Silva) and outputs a MEGAN RMA file

http://ab.inf.uni-tuebingen.de/software/malt/

The MALT MultiQC module reads the header of the MALT log files and produces three MultiQC sections:

  • A MALT summary statistics table
  • A Mappability bargraph
  • A Taxonomic assignment success bargraph

File search patterns​

malt:
  contents: MaltRun - Aligns sequences using MALT (MEGAN alignment tool)
  num_lines: 2