mirtop

note

Annotates miRNAs and isomiRs and compute general statistics in mirGFF3 format.

https://github.com/miRTop/mirtop/

DOI: 10.5281/zenodo.45385

MIT License

This tool is dedicated to the creation and management of miRNA alignment output using the standardized GFF3 format (see miRTop/mirGFF3). A unified miRNA alignment format allows to easily compare the output of different alignment tools. Currently, mirtop can convert into mirGFF3 the outputs of commonly used pipelines, such as seqbuster, isomiR-SEA, sRNAbench, Prost! as well as BAM files.

File search patterns

mirtop:
  fn: '*_mirtop_stats.log'