Nextflow 26.03.1-edge

Feature updates and improvements

Language features

• Hardened ProcessEntryHandler types and added test for dot-notation conflicts by @pditommaso in #6966
• Added print workflow outputs on run completion by @bentsherman in #6875
• Used destructuring syntax for process record/tuple inputs by @pditommaso in #6912

General

• Added -project-dir option to lint command by @bentsherman in #6728
• Added platform-related metadata to WorkflowRun lineage record by @jorgee in #6545
• Added request timeout to tower client by @jorgee in #6950
• Added support for Java 26 by @pditommaso in #6969
• Improved module command: enabled logging for module run, fixed info URL and search output by @pditommaso in #6961
• Skipped launch metadata fetch for CLI-submitted runs by @pditommaso in #6975
• Used -d flag for bkill in LSF executor by @cgoina in #6784

Bug fixes

Language features

• Fixed handling of empty publishedValues in PublishOp.onComplete for optional outputs by @jorgee in #6979
• Fixed incorrect evaluation of secret process directive by @bentsherman in #6934
• Fixed params block in included module by @bentsherman in #6940

S3

• Fixed download of empty files in old MinIO-based S3 transfers by @jorgee in #6944

AWS Batch

• Fixed AWS Batch machine type trace for new instance families by @FloWuenne in #6952

Plugins

• Fixed jackson-databind dependency in nf-amazon by @pditommaso in #6941

Dependencies

• Fixed netty and jackson vulnerabilities by @jorgee in #6955
• Fixed security vulnerabilities by @jorgee in #6938

General

• Fixed AgentLogObserver printing [SUCCESS] on failed runs by @pditommaso in #6962
• Fixed LogsCheckpoint thread interrupt race condition by @pditommaso in #6939
• Fixed module run CLI params cast to declared meta.yml input types by @jorgee in #6968
• Fixed typo in TowerRetryPolicy: maxAttemps → maxAttempts by @robsyme in #6949

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.03.1-edge