Seqera AI CLI

Installation

Command not found

If you see seqera: command not found after installation:

1. Ensure the Python scripts directory is in your PATH:

   # Restart your terminal or run
   source ~/.bashrc  # or ~/.zshrc

2. Verify your installation location:

   pip show seqera-ai

Python version errors

If you see errors about Python version:

1. Check you have Python 3.13+ installed:

   python3 --version

2. If using multiple Python versions, specify the correct one:

   python3.13 -m pip install seqera-ai

Permission errors

If you encounter permission errors during installation:

1. Use the --user flag with pip

   pip install --user seqera-ai

Authentication

Browser doesn't open

If the browser doesn't open automatically:

1. Check the terminal output for a URL
2. Copy and paste the URL into your browser manually
3. Complete authentication in the browser

Login timeout

If authentication times out:

1. Ensure you have internet connectivity
2. Check that https://seqera.io is accessible
3. Log out and log in again

Token storage errors

If you see keychain-related errors:

1. Ensure your system keychain service is running
2. Check that you have permission to access the keychain

note

The CLI will automatically fall back to file-based storage.

Session expired

If your session has expired:

1. Log out and log in again:

   seqera logout
   seqera login