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Nextflow 26.03.3-edge

Feature updates and improvements​

Language features​

  • Added option to disable printing workflow outputs by @bentsherman in #7018
  • Resolved structured process input types by @bentsherman in #7014

S3​

  • Applied socket timeout to S3 CRT connections by @jorgee in #7024
  • Managed AWS SDK exceptions to convert to the appropriate IO exceptions by @jorgee in #6707

Plugins​

  • Updated missing pf4j updates by @jorgee in #7016

Fusion​

  • Added Fusion GPU metrics collection by @pditommaso in #7022
  • Used Fusion trace metrics to replace bash command-trace wrapper by @pditommaso in #7041

General​

  • Added -files-from option to lint command to avoid ARG_MAX limit by @adamrtalbot in #6858
  • Added 26.04 migration docs by @bentsherman in #7000
  • Allowed cloning from local Git repositories when --offline by @MatthiasZepper in #7035
  • Allowed running pipeline from URL and main script path by @jorgee in #6602
  • Filtered autoLabels to selected workflow-metadata fields by @pditommaso in #7049
  • Honored process.resourceLabels in nf-seqera executor by @pditommaso in #7048
  • Renamed module info subcommand to module view by @pditommaso in #7052
  • Simplified demo module README template by @pditommaso in #7051
  • Suppressed lint progress logging with -q flag by @ewels in #6880

Bug fixes​

Language features​

  • Fixed formatting issues with complex expressions by @bentsherman in #7027

S3​

  • Fixed S3FileSystemProvider.newInputStream() draining full object on close by @jorgee in #7046

Plugins​

  • Fixed inconsistent indentation in nf-amazon by @bentsherman in #7047
  • Fixed nextflowVersion for nf-tower and nf-seqera plugins by @pditommaso in cbc0a2d8e

General​

  • Fixed generated process name in module create command by @jorgee in #7008
  • Fixed module info formatting separator by @pditommaso in #7033
  • Fixed resolution of -with-tower with TOWER_API_ENDPOINT by @bentsherman in #7045
  • Fixed saveCacheFiles early return skipping log file uploads by @munishchouhan in #7015

Dependencies​

  • Bumped org.bouncycastle:bcpkix-jdk18on from 1.79 to 1.84 by @dependabot in #7042
  • Bumped nf-amazon@3.8.3
  • Bumped nf-k8s@1.5.2
  • Bumped nf-seqera@0.18.0
  • Bumped nf-tower@1.25.0
  • Bumped nf-wave@1.19.1

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.03.3-edge

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