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Seqera Cloud v25.3.0_cycle33

Feature updates and improvements

Studios

  • Updated the Add Studio page to a single-step form.

Compute environments

  • AWS Batch compute environments now use AmazonLinux2023-based AMIs by default, offering improved security (IMDSv2), better performance with gp3 EBS volumes, and a more recent kernel. Existing compute environments continue to function with AmazonLinux2 without changes, though we recommend migrating to newer compute environments before AmazonLinux2 reaches end-of-life in June 2026.

Bug fixes

Compute environments

  • Fixed compute environment variables created without specifying a target environment (head or compute), which prevented the system from applying variables during workflow execution. The system now validates that at least one target environment is specified, preventing invalid configurations and providing clear error messages.

Pipelines

  • Fixed display issues with long helper text in pipeline schema forms. Helper text now wraps properly within form controls, improving readability for parameter descriptions with technical specifications or long value lists.

Seqera Cloud v25.3.0_cycle32

Bug fixes

Launchpad

  • Fixed an empty launch form issue when launching shared pipelines from another workspace. The launch form now correctly retrieves and displays all pipeline configuration when launching shared pipelines across workspaces.

General

  • Fixed OIDC authentication errors with spaces or special characters that caused application crashes instead of displaying proper error messages. Authentication errors during login now display correctly to users, preventing application failures.

Seqera Cloud v25.3.0_cycle31

Feature updates and improvements

Data Explorer

  • Added support for LakeFS Cloud in Data Explorer by enabling image preview and file upload functionality when using LakeFS Cloud as an S3-compatible storage provider.

Compute environments

  • Improved job failure handling in AWS Batch compute environments. Improved AWS Batch workflow behavior to automatically terminate unschedulable jobs instead of leaving them pending indefinitely, providing faster feedback when compute resources are insufficient for workflow requirements.
  • Added the g6e instance family to the list of AWS instances with NVMe storage.

Bug fixes

Workflows

  • Fixed an issue where plots and charts in MultiQC reports appeared as grey boxes instead of displaying correctly, ensuring all visualizations now render properly. MultiQC reports generated by pipeline runs now display complete quality control metrics and interactive charts without missing content.

Studios

  • Fixed an issue where YAML validation errors did not display immediately when importing Studio configurations from Git repositories, ensuring configuration issues are now visible as soon as the import completes.

Compute environments

  • Fixed an issue where AWS single VM compute environments could not pull container images from private Amazon ECR repositories, bringing them to feature parity with AWS Batch compute environments.

Launchpad

  • Fixed an issue with older pipeline launch records, where the system did not set the source type properly, resulting in the system failing to access the pipeline entity on launch.

Seqera Cloud v25.3.0_cycle30

Feature updates and improvements

Resource labels

  • Improved label inheritance when launching workflows via API to automatically apply predefined labels when omitting the labelIds field, aligning API functionality with the GUI and simplifying workflow relaunches.

Bug fixes

Workflows

  • Fixed an issue where changing the compute environment during workflow resume incorrectly updated the work directory path, causing failures because the workflow could not access cached results from the original run. The work directory now correctly retains the original value when resuming workflows with different compute environments.

UI/UX

  • Fixed an issue where the settings button in the usage overview widget incorrectly displayed workspace permissions in organization context, and improved workspace settings visibility to dynamically show or hide based on user permissions.
  • Fixed an issue where workspace settings buttons displayed incorrectly based on user permissions and context, ensuring the settings button now shows the appropriate organization or workspace settings based on the current view.

Pipelines

  • Fixed an issue where creator avatars did not display in the pipeline version details view due to a missing avatar URL conversion.

Seqera Cloud v25.3.0_cycle29

Feature updates and improvements

Datasets

  • Added support for date-only formats in search queries, allowing you to search using simple dates (e.g., 2025-02-02) instead of full ISO-8601 datetime strings.

Pipelines

  • Added pipeline version numbers and descriptions to preconfigured onboarding pipelines, making it easier to understand what each pipeline does.

Bug fixes

Data Explorer

  • Fixed an issue where filtering for Azure credentials in Data Explorer only returned one credential type instead of all three available Azure credential types.
  • Fixed an issue where the Data Explorer link did not appear in Task View when configuring multiple AWS credentials with similar permissions in the workspace.

Compute environments

  • Fixed an issue where Seqera Compute environments did not apply proper EC2 instance type constraints, ensuring consistent compute environment behavior and preventing instance unavailability issues.

Launchpad

  • Fixed an issue where users could dismiss critical notifications about compute environment substitutions when relaunching pipelines, ensuring important status messages remain visible throughout the workflow.

Seqera Cloud v25.3.0_cycle28

Feature updates and improvements

Compute environments

  • Updated documentation on free credit entitlement and management.
  • Updated the default Seqera AMI version to 0.0.10 for both AMD64 and ARM64 architectures in AWS Cloud deployments.

UI/UX

  • Added a copy button to data display chips, allowing you to quickly copy displayed values to your clipboard.
  • Added an improved onboarding flow for Seqera Compute customers to quickly run pipelines.

Pipelines

  • Added support for pinning the HEAD commit ID of the chosen revision to guarantee deterministic pipeline execution.

Data Explorer

  • Added support for image preview and file upload in Data Explorer when using Amazon S3-compatible API storage (for example, but not limited to, Cloudflare R2, MinIO, and Oracle Cloud).
  • Added support for MinIO object storage in Data Explorer, enabling users to browse, upload, and download files from MinIO instances using S3-compatible credentials.

Workflows

  • Added the ability to read task logs on Azure Cloud from Azure Blob Storage after pipeline completion, ensuring logs remain accessible throughout the entire task lifecycle.
  • Updated the nf-launcher container versions from 25.04.6 to 25.04.8 for both standard and Docker-in-Docker variants.

Bug fixes

Pipelines

  • Fixed an issue where resuming pipelines failed due to incorrect identification of launchable entity types.
  • Fixed issues where version name autogeneration used incorrect defaults and navigation returned users to the wrong page when editing pipeline versions.

Studios

  • Fixed an issue where users with Launch permissions could not access Studios due to insufficient workspace settings permissions.

General

  • Fixed an issue where administrators could accidentally create duplicate user accounts due to differences in email address casing.

Seqera Cloud v25.3.0_cycle27

Feature updates and improvements

Datasets

  • Enhanced dataset management with an updated details page.
  • Added the ability to hide/show datasets and disable specific dataset versions for better dataset lifecycle management.
  • Added support for dataset labels to improve organization and categorization of datasets within workspaces.

Workflows

  • Added the ability to filter pipeline runs by dataset ID using the datasetId: search keyword, improving traceability between datasets and workflows.

Bug fixes

Pipelines

  • Fixed an issue where errors for deleted or invalid pipeline revisions appeared on the wrong field, making them difficult to identify and resolve.

Seqera Cloud v25.3.0_cycle25

Feature updates and improvements

Compute environments

  • Added FSx Lustre support for Amazon Linux 2023 AMIs with automatic fallback from the Amazon Linux 2 installation method.

API

  • Added an optional maxLength query parameter to workflow log endpoints (GET /{workflowId}/log and GET /{workflowId}/log/{taskId}) for improved log management.
  • Added the managed identity and managed credentials endpoint to Seqera Platform API documentation.

Datasets

  • Added user tracking fields to datasets and dataset versions. Datasets now include a lastUpdatedBy field to track the user who last modified the dataset, while dataset versions include a createdBy field to track the user who created each version.

Permissions and roles

  • Removed the role check to show organization member mail, so organization owners can now view member and collaborator emails.

UI/UX

  • Improved the visual consistency and user experience across workflow run interfaces. Updates include improved table borders, enhanced tooltip information, and refined pagination layouts in the containers view.

General

  • Improved warning messages in Seqera Platform when cancelling workflows or stopping Studios due to insufficient credits.

Seqera Cloud v25.3.1_cycle23

Feature updates and improvements

Studios

  • Added an environment variable that supports launching Studios with an iframe served by Connect. To enable this, use the TOWER_DATA_STUDIO_ENABLE_CONNECT_IFRAME environment variable.

Compute environments

General

Seqera Cloud v25.3.0_cycle22

Feature updates and improvements

Data Explorer

  • Added support for MinIO object store to Data Explorer.

General

  • Improved audit logs by adding user agent and access token ID information, making them easily accessible through Platform UI.