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Changelog

Wave v1.25.1

Wave

Feature updates and improvements​

  • Removed unused env from jib task definition by @pditommaso in 3471824
  • Replaced deprecated AppArmor annotation with securityContext field by @pditommaso in #896
  • Removed app encoded values for Seqera environment @munishchouhan in #893
  • Bumped BuildKit to version 0.23.2 in tests @munishchouhan in #894
  • Bumped MN to version 4.9.3 by @pditommaso in 03b98e8
  • Bumped BuildKit to version 0.23.2 by @pditommaso in f31316d
  • Bumped corretto-25-al2023-mimalloc as base image by @pditommaso in 46a6e2a

Full changelog: https://github.com/seqeralabs/wave/compare/v1.25.0...v1.25.1

Nextflow 25.08.0-edge

Nextflow

Feature updates and improvements​

  • Added Claude Code GitHub Action integration by @pditommaso in #6389
  • Added Value type for dataflow values (value channels) by @bentsherman in #6372
  • Added descriptions to plugin MANIFEST.MF files by @pditommaso in #6348
  • Added null checks in TowerClient onFlowComplete method by @robsyme in #6384
  • Added plugins redirects by @christopher-hakkaart in #6385
  • Added test for prefetchMetadata call in pullPlugins method by @pditommaso in #6396
  • Added Type annotations by @bentsherman in #6278
  • Implemented Process Execution with Command-Line Parameter Mapping [experimental] by @pditommaso in #6381
  • Improved secret loading documentation and renamed ConfigNullProvider to EmptySecretProvider by @bentsherman in 9e4c975
  • Minor TowerClient improvement by @pditommaso in #6387
  • New executor for Fujitsu Technical Computing Suite (TCS) by @exthnet in #5928
  • Preserved method parameter names in nf-lang JAR by @bentsherman in #6355
  • Refactored Wave and Tower client to use lib-httpx library by @pditommaso in #6354
  • Replaced custom JWT refresh logic with standardized HxClient by @pditommaso in #6398
  • Replaced custom retry strategy with HxClient in RepositoryProvider by @pditommaso in #6351
  • Simplified plugin download implementation by @pditommaso in #6349
  • Supported standard environment variables for ANSI terminal output by @ewels in #6362
  • Updated core plugins to use Nextflow Gradle plugin by @bentsherman in #6379
  • Warned when file() matches a collection of files by @bentsherman in #5507
  • Workflow params by @bentsherman in #5929
  • Bumped netty deps to version 4.1.124.Final by @pditommaso in 9e8d596

Bug fixes​

  • Fixed CLI param override in strict config parser by @bentsherman in #6377
  • Fixed GString equality checks with String by @bentsherman in #6330
  • Fixed GitHub Actions commit message parsing to use only first line by @pditommaso in 5bc9162
  • Fixed NPE when contributors omit contribution field in manifest by @robsyme in #6383
  • Fixed Platform refresh token handling by @pditommaso in ba78ef7
  • Fixed duplicate page and redirects in docs by @christopher-hakkaart in #6386
  • Fixed false warning for map config options by @bentsherman in #6359
  • Fixed groupTuple operator to handle GString vs String keys consistently by @pditommaso in #6400
  • Fixed incorrect spelling in docs by @christopher-hakkaart in #6336
  • Fixed null reference error in workflow output by @bentsherman in #6374
  • Fixed typo in task config eval by @bentsherman in #6392

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v25.08.0-edge

MultiQC v1.31

MultiQC

Adding new module for Xenium analysis, 10x Genomics Xenium spatial transcriptomics quality control report.

The parquet format is stable since 1.29, renaming the output file from BETA-multiqc.parquet to multiqc.parquet.

Seqera Cloud v25.3.1_cycle23

Seqera Cloud

Feature updates and improvements​

Studios​

  • Added an environment variable that supports launching Studios with an iframe served by Connect. To enable this, use the TOWER_DATA_STUDIO_ENABLE_CONNECT_IFRAME environment variable.

Compute environments​

General​

Seqera Cloud v25.3.0_cycle22

Seqera Cloud

Feature updates and improvements​

Data Explorer​

  • Added support for MinIO object store to Data Explorer.

General​

  • Improved audit logs by adding user agent and access token ID information, making them easily accessible through Platform UI.

Seqera Cloud v25.3.0_cycle20

Seqera Cloud

Feature updates and improvements​

Fusion​

  • Updated the system to use the Amazon Linux 2023 image when selecting GPU-optimized images.

Resource labels​

  • Added filtering by type to the Settings > Labels and Resource labels page.