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Changelog

Seqera Cloud v24.2.0_cycle26

Seqera Cloud

Seqera Cloud authentication updates​

Seqera Platform Cloud has migrated to a new authentication provider, which includes two major changes to the login flow.

Passwords for email login​

  • Users signing in via email: The next time you sign in to Seqera Cloud, select the option to create a new account — "Create one" — and add a password for your existing account. All your existing account information will be preserved and all future sign-ins can be completed with your new password.

  • Users using Github/Google sign-in: You are not required to define a password for your account and shouldn’t see any changes on your next sign-in.

Account linking​

Users that sign in with multiple accounts associated with the same email address: You will be prompted to optionally merge your accounts into a single account. This will merge all your work across the two different accounts into the same account and give you the option to sign in via either method of authentication.

If you choose not to merge accounts, you will not be prompted again. If you wish to merge accounts later, or would like to merge accounts with different email addresses, contact Seqera Support.

Feature updates and improvements​

  • Data Studios now support GPUs.
  • The pipeline parameters input form now supports JSON schema draft 2020-12.
  • Augment Data Studios images with custom Conda environment.
  • Data studio creation now includes YAML validation.
  • Data Studios build stats are now included in the Dashboard.
  • New data studios now include "Add only" and "Add and start" actions.

Bug fixes​

  • Add back to login button in authentication error screen.
  • Add custom token cookie login handler for Nextflow requests to receive authentication cookies.
  • Data Studios UI fixes.
  • Jedis connection pool config which caused potential instabilities.
  • Improve Data Studios error messaging.
  • Delete Data Studio checkpoint on build failure.
  • Update default Data Studios tool versions.
  • Failed Data Studios can now be deleted.
  • Set launch form to parameters step view by default when a pipeline schema is present, regardless of specification.
  • Dashboard persisted filters exclude workspace IDs the user no longer has access to.
  • Do not fetch info for INVALID status pipelines, fetch for all other statuses including DISABLED.
  • Fixed a problem with Azure Entra credential creation.
  • Return an empty list of data studios when receiving an invalid status.
  • Fallback to primary compute environment when launching a shared pipeline without an associated compute environment from a private workspace.

Seqera Cloud v24.2.0_cycle25

Seqera Cloud

Feature updates and improvements​

  • Data Studios
  • Quick Launch now accepts pipelines that do not have a branch named master.
  • Improved query times on some clean up job queries.
  • NF Launcher image is now by default pulled from cr.seqera.io public registry instead of quay.
  • The new Launch Form is now available in Quick Launch and personal workspaces.
  • Improved fetching of the cloud cost estimation for Google Cloud Platform's (GCP) spot instances.
  • ECS container timeout configuration is now defaulted to 10 minutes (ECS_CONTAINER_CREATE_TIMEOUT=10m,ECS_CONTAINER_STOP_TIMEOUT=10m,ECS_MANIFEST_PULL_TIMEOUT=10m).

Bug fixes​

  • If the revision wasn't specified in Quick Launch, schemas weren't correctly fetched.
  • Retrieving managed identity IDs on updates resulted in the incorrect managed identity being displayed.
  • Start in new tab from the Data Studio form didn't navigate back the main tab to Data Studios page.

Nextflow 24.09.0-edge

Nextflow
  • Add Fusion version pinning info to Fusion config scope
  • Add container tip in the task error report
  • Add support for Java 23
  • Add Platform workflow prefix in AWS Batch job names
  • Fix AWS spot attempts with zero value
  • Fix Azure Fusion env misses credentials when no key or SAS provided
  • Fix CI build taking only the commit msg header
  • Fix Inconsistency with camelCase and kebab-case config param
  • Fix XPath default de-serializer issue
  • Fix failOnIgnore causes task monitor to stop submitting tasks
  • Fix large mermaid diagrams
  • Improve Wave build timeout handling
  • Include additional fields to manifest
  • Remove mini from Flux submit command
  • Update container handling with charliecloud
  • Update Documentation structure
  • Update nextflow install docs
  • Bump groovy 4.0.23
  • Bump nf-wave@1.6.0
  • Bump nf-azure@1.10.0
  • Bump nf-amazon@2.9.0

https://github.com/nextflow-io/nextflow/releases/tag/v24.09.0-edge

MultiQC v1.25.1

MultiQC

Python 3.13, bugs fixed, improved sample grouping UI, and handling freezes in containers with incompatible architectures.

Fusion v2.4.4

Fusion

Bugfix release to improve stability.

Feature updates and improvements​

  • Azure: Prefer Nextflow-provided SAS token for authentication
  • Define a default exit code 174 on Fusion IO error

Bug fixes​

  • Move folders that contain subfolders and big files
  • Propagate truncating to zero to remote storage
  • File moves overwriting files scheduled for upload

How to pin this version​

fusion {
  enabled = true
  containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.4-amd64.json'
}
info

For ARM64 CPU architecture, use containerConfigUrl = 'https://fusionfs.seqera.io/releases/v2.4.4-arm64.json'.